Computing Beginner Resources
Shell, Linux, and Bash
Shell: A shell is a command-line interface program that provides a user interface for interacting with an operating system
Bash: short for Bourne-Again SHell, is a command-line shell and scripting language widely used in Unix-like operating systems, including Linux.
Linux/Unix: both operating systems that are used through a command line but Linux is an open-source version of Unix.
- Bioinformatics | PNNL
- An Introduction to Linux Basics | DigitalOcean
- The Bash Guide
- Introducing the Shell
- Introduction to the Command Line for Genomics
- Unix Cheat Sheet
RStudio
- A Installing R and RStudio | Hands-On Programming with R (rstudio-education.github.io)
- Hands-On Programming with R (rstudio-education.github.io)
- R-Crash-Course
- Intro2R
- A crash-course in using a project-oriented workflow with Git + GitHub in scientific research
Metabarcoding bioinformatics
- Bioinformatic Methods for Biodiversity Metabarcoding — Bioinformatic Methods for Biodiversity Metabarcoding documentation (learnmetabarcoding.github.io)
- Introduction to the bioinformatic analysis of eDNA metabarcoding data – eDNA (otagobioinformaticsspringschool.github.io)